randomized single linkage dendrograms via matlab’s linkage function Search Results


machine learning toolbox in matlab  (MathWorks Inc)
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MathWorks Inc machine learning toolbox in matlab
Machine Learning Toolbox In Matlab, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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primer7  (PRIMER-E)
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PRIMER-E primer7
Primer7, supplied by PRIMER-E, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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maldi biotyper  (Bruker Corporation)
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Bruker Corporation maldi biotyper
Data analysis of six independent matrix-assisted laser desorption/ionization time-of-flight mass spectrometry <t>(MALDI-TOF</t> MS)profiles of crude she-donkey’s milk (DM), goat’s milk (GM), cow’s milk (CM), ewe milk (EM) and buffalo milk (BM). ( a ) Hierarchical clustering dendrogram; ( b ) Principal component (PCA) analysis with corresponding 3D scatter plot image obtained by <t>Biotyper;</t> ( c ) Bootstrapped ( n = 1000) hierarchical clustering tree generated via pvclust. Values on the edges of the clustering are p -values (%). Red values are AU (Approximately Unbiased) p -values, and green values are BP (Bootstrap Probability) values as explained in methods section. Clusters with AU larger than 95% are highlighted by red boxes and indicate reliable clades; ( d ) Pearson’s correlation coefficients represented as a correlation matrix. The correlation coefficients have been colored according to a scale ranging from 0 to 1, where blue corresponds to 0 and yellow to 1.
Maldi Biotyper, supplied by Bruker Corporation, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/randomized+single+linkage+dendrograms+via+matlab%E2%80%99s+linkage+function/pmc04159820-82-31-33?v=Bruker+Corporation
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Data analysis of six independent matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS)profiles of crude she-donkey’s milk (DM), goat’s milk (GM), cow’s milk (CM), ewe milk (EM) and buffalo milk (BM). ( a ) Hierarchical clustering dendrogram; ( b ) Principal component (PCA) analysis with corresponding 3D scatter plot image obtained by Biotyper; ( c ) Bootstrapped ( n = 1000) hierarchical clustering tree generated via pvclust. Values on the edges of the clustering are p -values (%). Red values are AU (Approximately Unbiased) p -values, and green values are BP (Bootstrap Probability) values as explained in methods section. Clusters with AU larger than 95% are highlighted by red boxes and indicate reliable clades; ( d ) Pearson’s correlation coefficients represented as a correlation matrix. The correlation coefficients have been colored according to a scale ranging from 0 to 1, where blue corresponds to 0 and yellow to 1.

Journal: International Journal of Molecular Sciences

Article Title: A Sensitive and Effective Proteomic Approach to Identify She-Donkey’s and Goat’s Milk Adulterations by MALDI-TOF MS Fingerprinting

doi: 10.3390/ijms150813697

Figure Lengend Snippet: Data analysis of six independent matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS)profiles of crude she-donkey’s milk (DM), goat’s milk (GM), cow’s milk (CM), ewe milk (EM) and buffalo milk (BM). ( a ) Hierarchical clustering dendrogram; ( b ) Principal component (PCA) analysis with corresponding 3D scatter plot image obtained by Biotyper; ( c ) Bootstrapped ( n = 1000) hierarchical clustering tree generated via pvclust. Values on the edges of the clustering are p -values (%). Red values are AU (Approximately Unbiased) p -values, and green values are BP (Bootstrap Probability) values as explained in methods section. Clusters with AU larger than 95% are highlighted by red boxes and indicate reliable clades; ( d ) Pearson’s correlation coefficients represented as a correlation matrix. The correlation coefficients have been colored according to a scale ranging from 0 to 1, where blue corresponds to 0 and yellow to 1.

Article Snippet: To visualize differences between milk and milk-adulterated populations, hierarchical clustering analysis was performed by principal component analysis (PCA) and dendrogram creation, via the external MATLAB (Matrix Laboratory) tool integrated in the MALDI Biotyper (Bruker Daltonik GmbH, Bremen, Germany).

Techniques: Mass Spectrometry, Generated

Pseudo-gel like image and MALDI-TOF MS spectra of the simulated adulteration of DM by CM.

Journal: International Journal of Molecular Sciences

Article Title: A Sensitive and Effective Proteomic Approach to Identify She-Donkey’s and Goat’s Milk Adulterations by MALDI-TOF MS Fingerprinting

doi: 10.3390/ijms150813697

Figure Lengend Snippet: Pseudo-gel like image and MALDI-TOF MS spectra of the simulated adulteration of DM by CM.

Article Snippet: To visualize differences between milk and milk-adulterated populations, hierarchical clustering analysis was performed by principal component analysis (PCA) and dendrogram creation, via the external MATLAB (Matrix Laboratory) tool integrated in the MALDI Biotyper (Bruker Daltonik GmbH, Bremen, Germany).

Techniques:

Pseudo-gel like image and MALDI-TOF MS spectra of the simulated adulteration of GM by CM.

Journal: International Journal of Molecular Sciences

Article Title: A Sensitive and Effective Proteomic Approach to Identify She-Donkey’s and Goat’s Milk Adulterations by MALDI-TOF MS Fingerprinting

doi: 10.3390/ijms150813697

Figure Lengend Snippet: Pseudo-gel like image and MALDI-TOF MS spectra of the simulated adulteration of GM by CM.

Article Snippet: To visualize differences between milk and milk-adulterated populations, hierarchical clustering analysis was performed by principal component analysis (PCA) and dendrogram creation, via the external MATLAB (Matrix Laboratory) tool integrated in the MALDI Biotyper (Bruker Daltonik GmbH, Bremen, Germany).

Techniques:

The identification ability (expressed by the symbol √ = Yes, × = No) of different percentages of DM and GM adulteration obtained by the Biotyper analysis; the correspondent correlation coefficients are also reported.

Journal: International Journal of Molecular Sciences

Article Title: A Sensitive and Effective Proteomic Approach to Identify She-Donkey’s and Goat’s Milk Adulterations by MALDI-TOF MS Fingerprinting

doi: 10.3390/ijms150813697

Figure Lengend Snippet: The identification ability (expressed by the symbol √ = Yes, × = No) of different percentages of DM and GM adulteration obtained by the Biotyper analysis; the correspondent correlation coefficients are also reported.

Article Snippet: To visualize differences between milk and milk-adulterated populations, hierarchical clustering analysis was performed by principal component analysis (PCA) and dendrogram creation, via the external MATLAB (Matrix Laboratory) tool integrated in the MALDI Biotyper (Bruker Daltonik GmbH, Bremen, Germany).

Techniques: